Showing posts with label metabolomics. Show all posts
Showing posts with label metabolomics. Show all posts

29 March 2013

Early Detection of Pancreatic Cancer Through Metabolomic Analysis


A diagnostic test based on metabolites, bio-molecules produced during biological processes, has been developed that can be used as to detect pancreatic cancer in its early stages.

The pancreas is the organ responsible for producing and releasing enzymes needed in the absorption of food. It is also the organ where insulin and glucagon (hormones that help regulate the body's blood sugar) are made.

The pancreas is a long gland located behind the abdomen. Detecting and diagnosing pancreatic cancer is difficult because of the organ's location. Early stages of the cancer does not cause any symptoms and the middle stage symptoms are usually varied and non-specific. Only in its later stages that pancreatic cancer is diagnosed.

Metabolomics is the science of determining the metabolome of a biological sample. Metabolomes are the collection of small organic molecules in a cell. Metabolomes represent the collection of all metabolites in a biological cell, tissue, organ or organism and are the result of cellular processes. Researchers have developed a way to use metabolimic analysis to detect early stages of pancreatic cancer.

On a related note, a 15 year old student from Maryland recently won the $75,000 top science prize for discovering a simple pancreatic test that is 90% effective (see embedded video).

05 June 2012

Study On Ephedrine And Weight Loss May Lead To Wearable Diet Vest That Burns Fat


Ephedrine is a stimulant that affects the central nervous system. It is used to treat breathing problems (as a bronchodilator), nasal congestion (as a decongestant), low blood pressure problems (orthostatic hypotension), or myasthenia gravis (a neuromuscular disorder).

It is an alkaloid derived from various plants in the genus Ephedra (family Ephedraceae). It works mainly by increasing the activity of noradrenaline on adrenergic receptors. It is most usually marketed in the hydrochloride and sulfate forms.

Ephedrine can be naturally found as a fine, white, odorless crystal or powder. It darkens on exposure to light and is freely soluble in water and sparingly soluble in alcohol.

It was a popular weight loss ingredient. In 2004, the FDA created a ban on ephedrine alkaloids that are marketed for reasons other than asthma, colds, allergies, other disease, or traditional Asian use. In 2006, FDA finally declared all dietary supplements containing ephedrine alkaloids adulterated, and illegal for marketing in the United States.

Joslin researchers find 'good fat' activated by cold, not ephedrine

Researchers at Joslin Diabetes Center have shown that while a type of "good" fat found in the body can be activated by cold temperatures, it is not able to be activated by the drug ephedrine.

The finding, published in today's issue of PNAS USA Early Edition, may lead to drugs or other methods aimed at activating the good fat, known as brown fat. When activated, brown fat burns calories and can help in the battle against obesity.

04 June 2012

Findings Show American Ginseng (Panax Quinquefolius) Reduce Fatigue In Cancer Patients With No Side Effects


Ginseng is a slow growing perennial plant with fleshy roots. It is comprised of eleven species belonging to the genus Panax of the family Araliaceae. A perennial plant grows and blooms during the spring and summer season and then dies back each autumn and winter. It returns the next spring from its root stock.

Ginseng can only be found in the Northern Hemisphere, North America, and in eastern Asia (mostly in Korea, North-Eastern China (Manchuria), and in Eastern Siberia). The herb is characterized by the presence of ginsenosides.

Ginsenosides are a class of steroid glycosides, and triterpene saponins. They are also known as panaxosides. They are found exclusively in ginseng and are studied extensively as these are believed to be the active compounds behind the claims of ginseng's efficacy.

Ginseng fights fatigue in cancer patients, Mayo Clinic-led study finds

High doses of the herb American ginseng (Panax quinquefolius) over two months reduced cancer-related fatigue in patients more effectively than a placebo, a Mayo Clinic-led study found. Sixty percent of patients studied had breast cancer. The findings are being presented at the American Society of Clinical Oncology's annual meeting.

Researchers studied 340 patients who had completed cancer treatment or were being treated for cancer at one of 40 community medical centers. Each day, participants received a placebo or 2,000 milligrams of ginseng administered in capsules containing pure, ground American ginseng root.

07 May 2012

Study on Curcumin in Curry And It's Benefits Against Cancer


Curry is a dish that is popular in India, Pakistan, Bangladesh, Sri Lanka, and other South East Asian countries. Each culture has a different way of serving curry.

The feature that binds all these cultures together with curry are the selection of spices used for each dish. These include coriander, turmeric, cumin, fenugreek, and red pepper. Other spices found in some curry are ginger, garlic, asafoetida, fennel seed, caraway, cinnamon, clove, mustard seed, green cardamom, black cardamom, nutmeg, long pepper, and black pepper

Tumeric, a principal spice found in curry contains curcumin. Tumeric is part of the ginger family. The derivative form of curcumin found in tumeric are natural phenols and it is what gives tumeric its yellow color

Trial launched into curry chemical's cancer-fighting properties

Compounds found in curry are being investigated as a way of improving drug response in patients with advanced bowel cancer in a new study launched today (Monday).

Scientists at the Cancer Research UK and National Institute for Health Research Experimental Cancer Medicine Centre (ECMC) in Leicester will investigate whether tablets containing curcumin – found in the spice turmeric – can be safely added to the standard treatment for bowel cancer that has spread.

Earlier studies have shown that curcumin can enhance the ability of chemotherapy to kill bowel cancer cells in the lab.

The trial is being funded by Hope Against Cancer, The Royal College of Surgeons and the Bowel Disease Research Foundation.

28 March 2012

Thyme Effective Herbal Treatment For Treating Skin Acne


One of the emerging natural treatment for acne is the use of thyme. Recent discoveries in the medical benefits of thyme have shown that it is an effective treatment for acne. Acne is the most common skin disease in the world. Scientists and researchers are constantly researching for the most effective treatment and therapy for the disease (see Related Links below for current advances and developments in treating acne).

Thyme is a delicate looking herb with a penetrating fragrance. Its leaves are curled, elliptically shaped and very small. The upper leaf is green-grey in color on top, while the underside is a whitish color. It is popularly used in cooking for its strong flavor especially for meats, soups and stews.

Aside from thyme's culinary uses, the herb also has medicinal benefits as well. Oil of thyme, the essential oil of common thyme (Thymus vulgaris), contains thymol. Thymol is an antiseptic that has been found to protect and significantly increase the percentage of healthy fats found in cell membranes and other cell structures. Thymol has also been shown to be effective against various fungi that commonly infect toenails. Thymol can also be found as the active ingredient in some all-natural, alcohol-free hand sanitizers.

Aside from thymol, Thyme essential oil also contains a range of additional compounds, such as p-Cymene, myrcene, borneol and linalool. Before the advent of modern antibiotics, oil of thyme was used to medicate bandages.

Studies have also shown that a dietary supplement of thyme can increase the amount of DHA (docosahexaenoic acid, an omega-3 fatty acid) in the brain, kidney, and heart cell membranes.

It must be noted that women should avoid thyme during pregnancy as it stimulate muscles, including the uterus, which possibly can cause a miscarriage.

Treatment of Skin Acne

Herbal preparations of thyme could be more effective at treating skin acne than prescription creams, according to research presented at the Society for General Microbiology's Spring Conference in Dublin. Further clinical testing could lead to an effective, gentler treatment for the skin condition.

Researchers from Leeds Metropolitan University tested the effect of thyme, marigold and myrrh tinctures on Propionibacterium acnes – the bacterium that causes acne by infecting skin pores and forming spots, which range from white heads through to puss-filled cysts. The group found that while all the preparations were able to kill the bacterium after five minutes exposure, thyme was the most effective of the three. What's more, they discovered that thyme tincture had a greater antibacterial effect than standard concentrations of benzoyl peroxide – the active ingredient in most anti-acne creams or washes.

13 February 2012

Scientists Study Secret Behind Chinese Herbal Medicine


Using herbs and its extracts to treat various ailments, symptoms and diseases is a practice that goes far back two thousand years. Ancient Chinese and Egyptian papyrus writings even describe the medicinal uses for plants.

With the advent of science and technology, medicine is far more advanced and is being produced and studied at the molecular level. Despite this, some herbal treatments have sound scientific backing and may even be at par with current medical technology.

For roughly two thousand years, Chinese herbalists have treated Malaria using a root extract, commonly known as Chang Shan, from a type of hydrangea that grows in Tibet and Nepal. More recent studies suggest that halofuginone, a compound derived from this extract's bioactive ingredient, could be used to treat many autoimmune disorders as well. Now, researchers from the Harvard School of Dental Medicine have discovered the molecular secrets behind this herbal extract's power.

It turns out that halofuginone (HF) triggers a stress-response pathway that blocks the development of a harmful class of immune cells, called Th17 cells, which have been implicated in many autoimmune disorders.

"HF prevents the autoimmune response without dampening immunity altogether," said Malcolm Whitman, a professor of developmental biology at Harvard School of Dental Medicine and senior author on the new study. "This compound could inspire novel therapeutic approaches to a variety of autoimmune disorders."

"This study is an exciting example of how solving the molecular mechanism of traditional herbal medicine can lead both to new insights into physiological regulation and to novel approaches to the treatment of disease," said Tracy Keller, an instructor in Whitman's lab and the first author on the paper.

Video: Scientific Research in Herbal Medicine


This study, which involved an interdisciplinary team of researchers at Massachusetts General Hospital and elsewhere, will be published online February 12 in Nature Chemical Biology.

Prior research had shown that HF reduced scarring in tissue, scleroderma (a tightening of the skin), multiple sclerosis, scar formation and even cancer progression. "We thought HF must work on a signaling pathway that had many downstream effects," said Keller.

In 2009, Keller and colleagues reported that HF protects against harmful Th17 immune cells without affecting other beneficial immune cells. Recognized only since 2006, Th17 cells are "bad actors," implicated in many autoimmune diseases such as inflammatory bowel disease, rheumatoid arthritis, multiple sclerosis and psoriasis. The researchers found that minute doses of HF reduced multiple sclerosis in a mouse model. As such, it was one of a new arsenal of drugs that selectively inhibits autoimmune pathology without suppressing the immune system globally. Further analysis showed that HF was somehow turning on genes involved in a newly discovered pathway called the amino acid response pathway, or AAR.

Scientists have only recently appreciated the role of the nutrient sensing-AAR pathway in immune regulation and metabolic signaling. There is also evidence that it extends lifespan and delays age-related inflammatory diseases in animal studies on caloric restriction. A conservationist of sorts, AAR lets cells know when they need to preserve resources. For example, when a cell senses a limited supply of amino acids for building proteins, AAR will block signals that promote inflammation because inflamed tissues require lots of protein.

"Think about how during a power outage we conserve what little juice we have left on our devices, foregoing chats in favor of emergency calls," said Whitman. "Cells use similar logic."

For the current study, the researchers investigated how HF activates the AAR pathway, looking at the most basic process that cells use to translate a gene's DNA code into the amino acid chain that makes up a protein.

The researchers were able to home in on a single amino acid, called proline, and discovered that HF targeted and inhibited a particular enzyme (tRNA synthetase EPRS) responsible for incorporating proline into proteins that normally contain it. When this occurred, the AAR response kicked in and produced the therapeutic effects of HF-treatment.

Providing supplemental proline reversed the effects of HF on Th17 cell differentiation, while adding back other amino acids did not, establishing the specificity of HF for proline incorporation. Added proline also reversed other therapeutic effects of HF, inhibiting its effectiveness against the malaria parasite as well as certain cellular processes linked to tissue scarring. Again, supplementation with other amino acids had no such effect. Such mounting evidence clearly demonstrated that HF acts specifically to restrict proline.

The researchers think that HF treatment mimics cellular proline deprivation, which activates the AAR response and subsequently impacts immune regulation. Researchers do not yet fully understand the role that amino acid limitation plays in disease response or why restricting proline inhibits Th17 cell production.

Nevertheless, "AAR pathway is clearly an interesting drug target, and halofuginone, in addition to its potential therapeutic uses, is a powerful tool for studying the AAR pathway," said Whitman.

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15 December 2011

What Is Metabolomics And Its Importance


Metabolomics is the science of determining the metabolome of a biological sample. The metabolome is the collection of small organic molecules in a cell. It represents the collection of all metabolites in a biological cell, tissue, organ or organism, which are the end products of cellular processes.

Metabolomics integrates the history of the combined genetic and environmental influences on the metabolism of that sample. By comparing the metabolomes of samples, one is able to gain insights as to the genetic, environmental and developmental modulators that distinguish the samples.

It helps scientists study how plant genes contribute to producing various chemical compounds, some of which are medicinally important.

Most people know that some medicines come from plants. Foxglove gives us the cardiac muscle stimulant digoxin. The periwinkle plant (image)offers a source of vincristine and vinblastine, a chemotherapy drug. Plants and its compounds have a lot of potential in medical and medicinal applications.

Natural products from plants serve as rich resources for drug development.It has a profound and lasting impact on human health and include compounds successfully used for decades such as digitalis, Taxol, vincristine, and morphine isolated from foxglove, periwinkle, yew, and opium poppy, respectively. The enormous structural diversity and biological activities of plant-derived compounds suggest that additional, medicinally relevant compounds remain to be discovered in plants.

Video: The Emerging Field of Metabolomics


While plant natural products continue to be a prime target for drug development, the clinical potential of these compounds is often curtailed due to low production levels in plant species. The drug Taxol almost stopped production because the primary source, yew tree bark, could not be used as a sustainable source of the drug. In this particular instance, a Taxol precursor happened to be more readily available in a renewable part of the tree, and a semi-synthetic protocol could be developed to convert it into the drug. While fortuitous, more generalized solutions, such as metabolic engineering of effective plant and microbial production platforms, are urgently needed to ensure that the wealth of bioactive compounds found in plants enter the clinical pipeline and find widespread use in medicine.

Scientists released the data they have so far on the genetic blueprint of medicinal plants and what beneficial properties are encoded by the genes identified.

The released resources is a $6 million initiative to study the genetic blueprints of medicinal plants.

Video: What is Metabolomics


"Our major goal has been to capture the genetic blueprints of medicinal plants for the advancement of drug discovery and development," said Joe Chappell, professor of plant biochemistry in the University of Kentucky College of Agriculture and coordinator for the Medicinal Plant Consortium (MPC).

Project partner Dr Sarah O'Connor at the John Innes Centre will now work with her research group towards the first full genetic sequence of a medicinal plant and will also experiment with combining beneficial properties from different plants to create the first new-to-nature compounds derived from plants. A priority focus will be compounds with anticancer activity.

"Fewer and fewer new drugs have been successfully making it to the marketplace over the last 10 years, in large part because of a reliance on chemical synthesis for making new chemicals," said Chappell.

"Somehow in our fast-track lives, we forgot to take advantage of the lessons provided by Mother Nature. That is all changing now with the recognition that two-thirds of all currently prescribed drugs can be traced back to natural sources and the development of resources such as those in the MPC to facilitate new drug discovery activities."

The John Innes Centre is a world-leading research centre based on the Norwich Research Park. The JIC's mission is to generate knowledge of plants and microbes through innovative research, to train scientists for the future, and to apply its knowledge to benefit agriculture, human health and well-being, and the environment. JIC delivers world class bioscience outcomes leading to wealth and job creation, and generating high returns for the UK economy. JIC is one of eight institutes that receive strategic funding from the Biotechnology and Biological Sciences Research Council and received a total of £28.4M investment in 2010-11.
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